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#               National Center for Biotechnology Information
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add_compile_definitions( __mod__="test/align" )

if (NOT WIN32)
	AddExecutableTest( Test_Align_Config_Tool test-config.cpp "${COMMON_LIBS_WRITE}" )

	add_test( NAME Test_Align_Config
		COMMAND
			Test_Align_Config_Tool
		WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
	)

	add_test( NAME Test_Align_Config_2
		COMMAND
			Test_Align_Config_Tool
				--config db/valid.config
				--ref-list db/valid.references
				--ref-file db/ref.fasta
		WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
	)

	add_test( NAME Test_Align_Config_3
	COMMAND
		Test_Align_Config_Tool
			--config db/VDB-3698.config
			--ref-list db/VDB-3698.references
			--ref-file db/VDB-3698.fasta
        WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
    )

	add_test( NAME Test_Align_Config_Empty_Sequence
	COMMAND
		Test_Align_Config_Tool
			--config db/VDB-5931.config
			--ref-list db/VDB-5931.references
			--ref-file db/VDB-5931.fasta
        WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
    )
    set_property(TEST Test_Align_Config_Empty_Sequence PROPERTY
        PASS_REGULAR_EXPRESSION "data empty while reading file within alignment module"
    )
endif()
